PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00728.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 207aa    MW: 23695.7 Da    PI: 4.3196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00728.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19556156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g+
  Rsa1.0_00728.1_g00009.1  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRGA 56
                             79*****999.**********933...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-11555IPR001471AP2/ERF domain
CDDcd000181.38E-27565No hitNo description
SMARTSM003801.0E-29669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-29664IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20664IPR016177DNA-binding domain
PROSITE profilePS5103221.667663IPR001471AP2/ERF domain
PRINTSPR003672.5E-9718IPR001471AP2/ERF domain
PRINTSPR003672.5E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDSAE KAARAFDAAL YCLRGAGARF  60
NFPDNPPDIP GGRSMTPQEI QVAANRFAKE ELLPPHQQRP TSQRGDKSSE EVTEISAREE  120
ISGGPTLGEV GEYNNYNNEN NSNGTDTSTY WPSLWEENFG MSEEFDTFYM EDSSQQQEHE  180
LSSDFYYDGA YVVEDDFSHY NINLWNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131845.11e-112PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5916e-98ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLM4CQV81e-112M4CQV8_BRARP; Uncharacterized protein
STRINGBra006599.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-94ERF family protein